nixpkgs/pkgs/applications/science/biology/bedtools/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

28 lines
899 B
Nix

{lib, stdenv, fetchFromGitHub, zlib, python, bzip2, lzma}:
stdenv.mkDerivation rec {
pname = "bedtools";
version = "2.29.2";
src = fetchFromGitHub {
owner = "arq5x";
repo = "bedtools2";
rev = "v${version}";
sha256 = "015qq3pwrwgnyxyi959niijjlswl231b3wxlsm3l8msv6fdhmkz8";
};
buildInputs = [ zlib python bzip2 lzma ];
cxx = if stdenv.cc.isClang then "clang++" else "g++";
cc = if stdenv.cc.isClang then "clang" else "gcc";
buildPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cxx} CC=${cc} -j $NIX_BUILD_CORES";
installPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cxx} CC=${cc} install";
meta = with lib; {
description = "A powerful toolset for genome arithmetic";
license = licenses.gpl2;
homepage = "https://bedtools.readthedocs.io/en/latest/";
maintainers = with maintainers; [ jbedo ];
platforms = platforms.unix;
};
}