nixpkgs/pkgs/development/python-modules/HTSeq/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

29 lines
886 B
Nix

{ lib, stdenv, buildPythonPackage, fetchFromGitHub, cython, numpy, pysam, matplotlib, python, isPy27, isPy3k }:
buildPythonPackage rec {
version = "0.12.4";
pname = "HTSeq";
src = fetchFromGitHub {
owner = "htseq";
repo = "htseq";
rev = "release_${version}";
sha256 = "0y7vh249sljqjnv81060w4xkdx6f1y5zdqkh38yk926x6v9riijm";
};
nativeBuildInputs = [ cython ];
propagatedBuildInputs = [ numpy pysam matplotlib ];
checkPhase = stdenv.lib.optionalString isPy27 ''
${python.interpreter} python2/test/test_general.py
'' + stdenv.lib.optionalString isPy3k ''
${python.interpreter} python3/test/test_general.py
'';
meta = with lib; {
homepage = "https://htseq.readthedocs.io/";
description = "A framework to work with high-throughput sequencing data";
maintainers = with maintainers; [ unode ];
platforms = platforms.unix;
};
}