nixpkgs/pkgs/applications/science/misc/cytoscape/default.nix
R. RyanTM 65e18bd38f cytoscape: 3.6.0 -> 3.6.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/cytoscape/versions.

These checks were done:

- built on NixOS
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape -h’ got 0 exit code
- ran ‘/nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1/bin/cytoscape --help’ got 0 exit code
- found 3.6.1 with grep in /nix/store/87clhargb10b1aps6nq86k0xz6yqyydz-cytoscape-3.6.1
- directory tree listing: https://gist.github.com/8bad808238fc034c5394a80d8a5c1554
2018-04-11 01:12:34 -07:00

35 lines
878 B
Nix

{ stdenv, fetchurl, jre, makeWrapper }:
stdenv.mkDerivation rec {
name = "cytoscape-${version}";
version = "3.6.1";
src = fetchurl {
url = "http://chianti.ucsd.edu/${name}/${name}.tar.gz";
sha256 = "1pkdilv1nw6vvdxk71bwjngr8yafrsqwaqvlakhp8yb342r1jd4s";
};
buildInputs = [jre makeWrapper];
installPhase = ''
mkdir -pv $out/{share,bin}
cp -Rv * $out/share/
ln -s $out/share/cytoscape.sh $out/bin/cytoscape
wrapProgram $out/share/cytoscape.sh \
--set JAVA_HOME "${jre}" \
--set JAVA "${jre}/bin/java"
chmod +x $out/bin/cytoscape
'';
meta = {
homepage = http://www.cytoscape.org;
description = "A general platform for complex network analysis and visualization";
license = stdenv.lib.licenses.lgpl21;
maintainers = [stdenv.lib.maintainers.mimadrid];
platforms = stdenv.lib.platforms.unix;
};
}