nixpkgs/pkgs/development/python-modules/nipype/default.nix
2019-10-18 09:53:59 +02:00

106 lines
1.7 KiB
Nix

{ stdenv
, buildPythonPackage
, fetchPypi
, isPy3k
# python dependencies
, click
, configparser ? null
, dateutil
, funcsigs
, future
, futures
, mock
, networkx
, nibabel
, numpy
, packaging
, prov
, psutil
, pybids
, pydot
, pytest
, pytest_xdist
, pytest-forked
, scipy
, simplejson
, traits
, xvfbwrapper
, pytestcov
, codecov
# other dependencies
, which
, bash
, glibcLocales
, callPackage
}:
assert !isPy3k -> configparser != null;
let
# This is a temporary convenience package for changes waiting to be merged into the primary rdflib repo.
neurdflib = callPackage ./neurdflib.nix { };
in
buildPythonPackage rec {
pname = "nipype";
version = "1.2.3";
src = fetchPypi {
inherit pname version;
sha256 = "a79c7a72897d81985d20a8c805465285400b59a45ddc527cda44026795fd1c47";
};
postPatch = ''
substituteInPlace nipype/interfaces/base/tests/test_core.py \
--replace "/usr/bin/env bash" "${bash}/bin/bash"
'';
propagatedBuildInputs = [
click
dateutil
funcsigs
future
networkx
neurdflib
nibabel
numpy
packaging
prov
psutil
pydot
scipy
simplejson
traits
xvfbwrapper
] ++ stdenv.lib.optional (!isPy3k) [
configparser
futures
];
checkInputs = [
pybids
codecov
glibcLocales
mock
pytest
pytest-forked
pytest_xdist
pytestcov
which
];
# ignore tests which incorrect fail to detect xvfb
checkPhase = ''
LC_ALL="en_US.UTF-8" pytest -v nipype -k 'not display'
'';
meta = with stdenv.lib; {
homepage = https://nipy.org/nipype/;
description = "Neuroimaging in Python: Pipelines and Interfaces";
license = licenses.bsd3;
maintainers = with maintainers; [ ashgillman ];
};
}