nixpkgs/pkgs/applications/science/biology
2020-04-01 17:29:55 +00:00
..
ants ants: use itk 4.x 2019-09-13 11:54:21 +02:00
aragorn
bayescan bayescan: init at 2.1 (#68191) 2020-01-09 12:38:53 -05:00
bcftools bcftools: 1.9 -> 1.10.2 2019-12-22 20:00:29 -08:00
bedtools bedtools: 2.29.1 -> 2.29.2 2019-12-18 10:39:25 +11:00
bftools bftools: 5.9.2 -> 6.3.0 2019-12-06 02:11:00 -08:00
blast blast: init at 2.10.0 (#61430) 2020-01-07 20:14:18 +01:00
bowtie2
bwa
cd-hit
clustal-omega
cmtk
conglomerate
dcm2niix dcm2niix: 1.0.20190410 -> 1.0.20190902 2019-10-22 16:31:19 -07:00
deeptools deeptools: 3.3.1 -> 3.4.1 2020-03-30 21:47:32 -07:00
delly delly: 0.8.1 -> 0.8.2 2020-02-11 19:21:59 +11:00
diamond
ecopcr
eggnog-mapper treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
emboss
est-sfs
exonerate
EZminc EZminc: 2017-08-29 -> 2019-07-25; mark unbroken 2019-10-26 09:55:30 -07:00
freebayes freebayes: 2017-08-23 -> 1.3.1 (2019-06-03) 2019-11-20 09:10:31 -08:00
hisat2
hmmer hmmer: 3.2.1 -> 3.3 2019-11-27 18:40:23 -08:00
igv maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
inormalize
itsx
iv
kallisto kallisto: 0.46.1 -> 0.46.2 2020-02-15 22:39:58 +01:00
kssd kssd: init at 1.0 2019-12-08 16:48:59 +01:00
last last: 1047 -> 1060 2020-03-27 04:12:41 +00:00
macse macse: init at 2.03 2019-09-24 08:24:07 +02:00
manta manta: init 1.6.0 2020-01-24 02:02:19 -08:00
megahit megahit: 1.1.4 -> 1.2.9 2019-11-02 15:53:57 +01:00
messer-slim
migrate
minc-tools minc_tools: enable building conversion tools 2020-02-10 19:53:25 +01:00
minc-widgets
minia minia: init at 3.2.1 2019-12-20 11:27:04 +11:00
minimap2
mni_autoreg
mosdepth
mrbayes
mrtrix mrtrix: init at 3.0_RC3_latest 2020-02-16 22:25:25 -05:00
muscle
N3
ncbi-tools
neuron
niftyreg niftyreg: fix build with gcc9 2019-11-03 14:43:37 +01:00
niftyseg nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-14 21:25:10 -05:00
octopus
paml paml: 4.9i -> 4.9j 2019-12-01 18:43:58 +01:00
picard-tools picard-tools: 2.22.0 -> 2.22.2 2020-04-01 17:29:55 +00:00
platypus
plink
plink-ng
poretools treewide: fix redirected urls 2020-01-22 11:26:22 +01:00
prodigal
raxml
samtools samtools: 1.9 -> 1.10 2020-01-19 13:13:01 -08:00
seaview seaview: 5.0 -> 5.0.2 2020-03-26 00:25:29 +00:00
snpeff
somatic-sniper
sortmerna
spades Revert "Revert "Merge master into staging-next"" 2020-02-05 19:41:25 +01:00
stacks stacks: 2.41 -> 2.52 2020-03-30 16:13:02 -07:00
star star: 2.7.2b -> 2.7.3a 2019-11-03 10:23:05 +01:00
strelka strelka: fix build w/ gcc9 2019-12-30 03:18:19 +01:00
sumatools treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
svaba svaba: init at 1.1.0 2019-12-08 14:51:05 +01:00
tebreak tebreak: init at 1.0 2019-12-29 17:16:10 +11:00
trimal
truvari truvari:1.3.2->1.3.4 2020-03-02 09:15:58 +01:00
varscan
vcftools
xenomapper python.pkgs wide: fix problematic urls 2020-01-10 21:02:12 -08:00