nixpkgs/pkgs/applications/science/biology/minia/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

34 lines
785 B
Nix

{ lib, stdenv, fetchFromGitHub, cmake, hdf5, boost }:
stdenv.mkDerivation rec {
pname = "minia";
version = "3.2.1";
src = fetchFromGitHub {
owner = "GATB";
repo = "minia";
rev = "v${version}";
sha256 = "0bmfrywixaaql898l0ixsfkhxjf2hb08ssnqzlzacfizxdp46siq";
fetchSubmodules = true;
};
patches = [ ./no-bundle.patch ];
NIX_CFLAGS_COMPILE = [ "-Wformat" ];
nativeBuildInputs = [ cmake ];
buildInputs = [ hdf5 boost ];
prePatch = ''
rm -rf thirdparty/gatb-core/gatb-core/thirdparty/{hdf5,boost}
'';
meta = with lib; {
description = "Short read genome assembler";
homepage = "https://github.com/GATB/minia";
license = licenses.agpl3;
maintainers = with maintainers; [ jbedo ];
platforms = [ "x86_64-linux" ];
};
}