nixpkgs/pkgs/applications/science/biology
2021-03-18 19:24:39 +01:00
..
ants treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
aragorn treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
bayescan treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
bcftools treewide: add targetPrefix to hardcoded references to CC=cc 2021-02-20 01:01:46 +07:00
bedtools bedtools: 2.29.2 -> 2.30.0 2021-01-25 13:06:22 +11:00
bftools treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
blast blast: 2.10.0 -> 2.11.0 2021-02-06 19:20:56 +00:00
bowtie treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
bowtie2 treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
bppsuite bppsuite: init at 2.4.1 2020-05-25 21:13:02 -04:00
bwa treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
cd-hit cd-hit: remove non-existent package 2021-01-19 01:16:25 -08:00
clustal-omega treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
cmtk treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
conglomerate treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
dcm2niix treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
deeptools deeptools: Fix tests 2020-11-25 21:36:37 +01:00
delly delly: 0.8.6 -> 0.8.7 2021-01-18 14:22:30 +00:00
diamond treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
ecopcr ecopcr: use spaces for indentation 2021-01-20 10:53:10 +10:00
eggnog-mapper treewide: makeWrapper buildInputs to nativeBuildInputs 2021-02-19 20:09:16 +07:00
emboss treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
est-sfs treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
exonerate treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix 2021-01-19 01:16:25 -08:00
EZminc treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix 2021-01-19 01:16:25 -08:00
fastp treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
freebayes treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
hisat2 treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
hmmer treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
igv treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
inormalize treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
itsx treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
iv treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
kallisto treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
kent treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
kssd treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
last last: 1178 -> 1179 2021-02-21 21:24:17 +00:00
lumpy treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
macse treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
manta treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
megahit treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
messer-slim messer-slim: 3.2.1 -> 3.6 2021-03-04 18:40:37 +00:00
migrate treewide: fix double quoted strings in meta.description 2021-01-24 19:56:59 +07:00
minc-tools treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
minc-widgets treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
minia treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
minimap2 treewide: editorconfig fixes 2021-01-20 09:11:11 +10:00
mni_autoreg treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
mosdepth treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
mrbayes treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
mrtrix mrtrix: 3.0.0 -> 3.0.2 2020-09-30 22:13:18 -04:00
muscle treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
N3 treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
ncbi-tools treewide: fix double quoted strings in meta.description 2021-01-24 19:56:59 +07:00
neuron mpi: use mpi attribute consistently as the default MPI implementations 2021-01-23 12:15:13 +01:00
niftyreg treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
niftyseg treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
obitools treewide: remove stdenv where not needed 2021-01-25 18:31:47 +01:00
octopus octopus: 0.7.0 -> 0.7.1 2021-03-10 08:44:18 +11:00
paml treewide: fix double quoted strings in meta.description 2021-01-24 19:56:59 +07:00
picard-tools picard-tools: 2.24.2 -> 2.25.0 2021-02-11 21:10:44 +00:00
platypus treewide: makeWrapper buildInputs to nativeBuildInputs 2021-02-19 20:09:16 +07:00
plink-ng treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
poretools treewide: remove stdenv where not needed 2021-01-25 18:31:47 +01:00
prodigal treewide: add targetPrefix to hardcoded references to CC=cc 2021-02-20 01:01:46 +07:00
quast treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
raxml mpi: use mpi attribute consistently as the default MPI implementations 2021-01-23 12:15:13 +01:00
sambamba sambamba: 0.7.1 -> 0.8.0 2021-03-18 17:41:30 +02:00
samblaster treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
samtools treewide: stdenv.lib -> lib 2021-01-16 17:58:11 +07:00
seaview treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
snpeff treewide: unzip buildInputs to nativeBuildInputs (#112302) 2021-02-20 16:01:53 -05:00
somatic-sniper treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
sortmerna sortmerna: mark broken on darwin 2021-01-26 12:55:33 -05:00
spades SPAdes: 3.14.1 -> 3.15.1 2021-03-09 17:01:01 +00:00
stacks stacks: 2.53 -> 2.55 2021-03-09 17:19:55 +00:00
star star: 2.7.7a -> 2.7.8a 2021-02-23 10:38:00 +00:00
strelka treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
sumatools treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
svaba treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
tebreak treewide: remove stdenv where not needed 2021-01-25 18:31:47 +01:00
trimal treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
truvari truvari: 1.3.4 -> 2.0.2, fixing build 2020-09-20 12:25:17 +01:00
varscan treewide: makeWrapper buildInputs to nativeBuildInputs 2021-02-19 20:09:16 +07:00
vcftools treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix 2021-01-19 01:16:25 -08:00
whisper treewide: with stdenv.lib; in meta -> with lib; 2021-01-11 10:38:22 +01:00
xenomapper