nixpkgs/pkgs/applications/science/biology/bftools/default.nix
2019-01-10 18:28:28 -05:00

42 lines
1.2 KiB
Nix

{ stdenv, lib, makeWrapper, fetchzip, jre }:
stdenv.mkDerivation rec {
name = "bftools-${version}";
version = "5.9.2";
src = fetchzip {
url = "http://downloads.openmicroscopy.org/bio-formats/${version}/artifacts/bftools.zip";
sha256 = "08lmbg3kfxh17q6548il0i2h3f9a6ch8r0r067p14dajhzfpjyqj";
};
installPhase = ''
find . -maxdepth 1 -perm -111 -type f -not -name "*.sh" \
-exec install -vD {} "$out"/bin/{} \;
mkdir $out/libexec
mkdir -p $out/share/java
cp ./*.sh $out/libexec
cp ./*.jar $out/share/java
for file in $out/bin/*; do
substituteInPlace $file --replace "\$BF_DIR" $out/libexec
done
substituteInPlace $out/libexec/bf.sh --replace "\$BF_JAR_DIR" $out/share/java
'';
postFixup = ''
wrapProgram $out/libexec/bf.sh --prefix PATH : "${lib.makeBinPath [ jre ]}"
'';
nativeBuildInputs = [ makeWrapper ];
meta = with stdenv.lib; {
description = "A bundle of scripts for using Bio-Formats on the command line with bioformats_package.jar already included";
license = licenses.gpl2;
platforms = platforms.all;
homepage = https://www.openmicroscopy.org/bio-formats/;
maintainers = [ maintainers.tbenst ];
};
}