nixpkgs/pkgs/applications/science/biology/truvari/default.nix
Robert Scott ecd5886830 truvari: 1.3.4 -> 2.0.2, fixing build
seeing it has no tests, use pythonImportsCheck in an attempt to detect
total breakage, even though it's not intended to be used as an importable
module
2020-09-20 12:25:17 +01:00

48 lines
1.1 KiB
Nix

{ lib
, fetchFromGitHub
, python3Packages
}:
python3Packages.buildPythonApplication rec {
pname = "truvari";
version = "2.0.2";
src = fetchFromGitHub {
owner = "spiralgenetics";
repo = "truvari";
rev = "v${version}";
sha256 = "0lp1wnldjv92k4ncga1h0icb0dpjsrx427vggg40x04a7kp9lwx0";
};
propagatedBuildInputs = with python3Packages; [
pyvcf
python-Levenshtein
progressbar2
pysam
pyfaidx
intervaltree
pytabix
acebinf
bwapy
joblib
pandas
];
# no tests
doCheck = false;
pythonImportsCheck = [ "truvari" ];
meta = with lib; {
description = "Structural variant comparison tool for VCFs";
homepage = "https://github.com/spiralgenetics/truvari";
license = licenses.mit;
maintainers = with maintainers; [ scalavision ];
longDescription = ''
Truvari is a benchmarking tool for comparison sets of SVs.
It can calculate the recall, precision, and f-measure of a
vcf from a given structural variant caller. The tool
is created by Spiral Genetics.
'';
};
}