nixpkgs/pkgs/applications/science/biology/kallisto/default.nix
2019-11-30 21:12:54 +01:00

29 lines
810 B
Nix

{ stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }:
stdenv.mkDerivation rec {
pname = "kallisto";
version = "0.46.1";
src = fetchFromGitHub {
repo = "kallisto";
owner = "pachterlab";
rev = "v${version}";
sha256 = "09ldgy70wziw51ma4a3b7vyrphzf2v1cnq1j5r1wwgfmx8fgbh2z";
};
nativeBuildInputs = [ autoconf cmake ];
buildInputs = [ hdf5 zlib ];
# Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
enableParallelBuilding = false;
meta = with stdenv.lib; {
description = "Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data";
homepage = "https://pachterlab.github.io/kallisto";
license = licenses.bsd2;
platforms = platforms.linux;
maintainers = with maintainers; [ arcadio ];
};
}