nixpkgs/pkgs/applications/science/biology/inormalize/default.nix

38 lines
1 KiB
Nix

{ stdenv, fetchFromGitHub, cmake, makeWrapper,
perlPackages,
libminc, EBTKS }:
stdenv.mkDerivation rec {
pname = "inormalize";
name = "${pname}-2014-10-21";
src = fetchFromGitHub {
owner = "BIC-MNI";
repo = pname;
rev = "79cea9cdfe7b99abfd40afda89ab2253b596ad2f";
sha256 = "1ahqv5q0ljvji99a5q8azjkdf6bgp6nr8lwivkqwqs3jm0k5clq7";
};
patches = [ ./lgmask-interp.patch ./nu_correct_norm-interp.patch ];
nativeBuildInputs = [ cmake makeWrapper ];
buildInputs = [ libminc EBTKS ];
propagatedBuildInputs = with perlPackages; [ perl GetoptTabular MNI-Perllib ];
cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/cmake" "-DEBTKS_DIR=${EBTKS}/lib/" ];
postFixup = ''
for p in $out/bin/*; do
wrapProgram $p --prefix PERL5LIB : $PERL5LIB
done
'';
meta = with stdenv.lib; {
homepage = "https://github.com/BIC-MNI/${pname}";
description = "Program to normalize intensity of MINC files";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
};
}