nixpkgs/pkgs/applications/science/biology/cd-hit/default.nix

39 lines
1.2 KiB
Nix

{ lib, stdenv, fetchFromGitHub, makeWrapper, zlib, perl, perlPackages, openmp }:
stdenv.mkDerivation rec {
version = "4.8.1";
pname = "cd-hit";
src = fetchFromGitHub {
owner = "weizhongli";
repo = "cdhit";
rev = "V${version}";
sha256 = "032nva6iiwmw59gjipm1mv0xlcckhxsf45mc2qbnv19lbis0q22i";
};
propagatedBuildInputs = [ perl perlPackages.TextNSP perlPackages.ImageMagick ];
nativeBuildInputs = [ zlib makeWrapper ];
buildInputs = lib.optional stdenv.cc.isClang openmp;
makeFlags = [
"CC=${stdenv.cc.targetPrefix}c++" # remove once https://github.com/weizhongli/cdhit/pull/114 is merged
"PREFIX=$(out)/bin"
];
preInstall = "mkdir -p $out/bin";
postFixup = ''
wrapProgram $out/bin/FET.pl --prefix PERL5LIB : $PERL5LIB
wrapProgram $out/bin/plot_2d.pl --prefix PERL5LIB : $PERL5LIB
wrapProgram $out/bin/clstr_list_sort.pl --prefix PERL5LIB : $PERL5LIB
'';
meta = with lib; {
description = "Clustering and comparing protein or nucleotide sequences";
homepage = "http://weizhongli-lab.org/cd-hit/";
license = licenses.gpl2;
maintainers = [ maintainers.bzizou ];
platforms = platforms.unix;
};
}