nixpkgs/pkgs/development/compilers/julia/0.6.nix
Rob Vermaas f8fe297ff1
julia: remove wrapper from julia binaries, in stead
symlink shared libraries from LD_LIBRARY_PATH into lib/julia,
as using a wrapper with LD_LIBRARY_PATH causes segmentation
faults when program returns an error:

 $ julia -e 'throw(Error())'

only applied for 0.6, which is the current julia version. Will
see if we can remove the older versions in master.

(cherry picked from commit 41f3a4e0030a1b0233de6ca7f5208c44eb370313)
2018-04-06 14:20:12 +02:00

195 lines
5.8 KiB
Nix

{ stdenv, fetchgit, fetchurl, fetchzip
# build tools
, gfortran, m4, makeWrapper, patchelf, perl, which, python2
, runCommand
, paxctl
# libjulia dependencies
, libunwind, readline, utf8proc, zlib
, llvm, libffi, ncurses
# standard library dependencies
, curl, fftwSinglePrec, fftw, gmp, libgit2, mpfr, openlibm, openspecfun, pcre2
# linear algebra
, openblas, arpack, suitesparse
# Darwin frameworks
, CoreServices, ApplicationServices
}:
with stdenv.lib;
# All dependencies must use the same OpenBLAS.
let
arpack_ = arpack;
suitesparse_ = suitesparse;
in
let
arpack = arpack_.override { inherit openblas; };
suitesparse = suitesparse_.override { inherit openblas; };
in
let
dsfmtVersion = "2.2.3";
dsfmt = fetchurl {
url = "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT/dSFMT-src-${dsfmtVersion}.tar.gz";
sha256 = "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42";
};
libuvVersion = "d8ab1c6a33e77bf155facb54215dd8798e13825d";
libuv = fetchurl {
url = "https://api.github.com/repos/JuliaLang/libuv/tarball/${libuvVersion}";
sha256 = "0q5ahc9dzca2yc6cjbhpfi9nwc4yhhjbgxgsychksn13d24gv7ba";
};
rmathVersion = "0.1";
rmath-julia = fetchurl {
url = "https://api.github.com/repos/JuliaLang/Rmath-julia/tarball/v${rmathVersion}";
sha256 = "1qyps217175qhid46l8f5i1v8i82slgp23ia63x2hzxwfmx8617p";
};
virtualenvVersion = "15.0.0";
virtualenv = fetchurl {
url = "mirror://pypi/v/virtualenv/virtualenv-${virtualenvVersion}.tar.gz";
sha256 = "06fw4liazpx5vf3am45q2pdiwrv0id7ckv7n6zmpml29x6vkzmkh";
};
in
stdenv.mkDerivation rec {
pname = "julia";
version = "0.6.2";
name = "${pname}-${version}";
src = fetchzip {
url = "https://github.com/JuliaLang/${pname}/releases/download/v${version}/${name}.tar.gz";
sha256 = "0ym4n9vn6w8vj175mmsc2nzvdk2ij0cdrs44lkr3p0signji73b5";
};
prePatch = ''
mkdir deps/srccache
cp "${dsfmt}" "./deps/srccache/dsfmt-${dsfmtVersion}.tar.gz"
cp "${rmath-julia}" "./deps/srccache/Rmath-julia-${rmathVersion}.tar.gz"
cp "${libuv}" "./deps/srccache/libuv-${libuvVersion}.tar.gz"
cp "${virtualenv}" "./deps/srccache/virtualenv-${virtualenvVersion}.tar.gz"
'';
patches = [
./0001.1-use-system-utf8proc.patch
./0002-use-system-suitesparse.patch
] ++ stdenv.lib.optional stdenv.needsPax ./0004-hardened.patch;
postPatch = ''
patchShebangs . contrib
for i in backtrace replutil cmdlineargs compile; do
mv test/$i.jl{,.off}
touch test/$i.jl
done
sed -e 's/Invalid Content-Type:/invalid Content-Type:/g' -i test/libgit2.jl
sed -e 's/Failed to resolve /failed to resolve /g' -i test/libgit2.jl
'';
buildInputs = [
arpack fftw fftwSinglePrec gmp libgit2 libunwind mpfr
pcre2.dev openblas openlibm openspecfun readline suitesparse utf8proc
zlib llvm
]
++ stdenv.lib.optionals stdenv.isDarwin [CoreServices ApplicationServices]
;
nativeBuildInputs = [ curl gfortran m4 makeWrapper patchelf perl python2 which ]
++ stdenv.lib.optional stdenv.needsPax paxctl;
makeFlags =
let
arch = head (splitString "-" stdenv.system);
march = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
or (throw "unsupported architecture: ${arch}");
# Julia requires Pentium 4 (SSE2) or better
cpuTarget = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
or (throw "unsupported architecture: ${arch}");
in [
"ARCH=${arch}"
"MARCH=${march}"
"JULIA_CPU_TARGET=${cpuTarget}"
"PREFIX=$(out)"
"prefix=$(out)"
"SHELL=${stdenv.shell}"
"USE_SYSTEM_BLAS=1"
"USE_BLAS64=${if openblas.blas64 then "1" else "0"}"
"LIBBLAS=-lopenblas"
"LIBBLASNAME=libopenblas"
"USE_SYSTEM_LAPACK=1"
"LIBLAPACK=-lopenblas"
"LIBLAPACKNAME=libopenblas"
"USE_SYSTEM_SUITESPARSE=1"
"SUITESPARSE_LIB=-lsuitesparse"
"SUITESPARSE_INC=-I${suitesparse}/include"
"USE_SYSTEM_ARPACK=1"
"USE_SYSTEM_FFTW=1"
"USE_SYSTEM_GMP=1"
"USE_SYSTEM_LIBGIT2=1"
"USE_SYSTEM_LIBUNWIND=1"
"USE_SYSTEM_LLVM=1"
"LLVM_VER=3.9.1"
"USE_SYSTEM_MPFR=1"
"USE_SYSTEM_OPENLIBM=1"
"USE_SYSTEM_OPENSPECFUN=1"
"USE_SYSTEM_PATCHELF=1"
"USE_SYSTEM_PCRE=1"
"PCRE_CONFIG=${pcre2.dev}/bin/pcre2-config"
"PCRE_INCL_PATH=${pcre2.dev}/include/pcre2.h"
"USE_SYSTEM_READLINE=1"
"USE_SYSTEM_UTF8PROC=1"
"USE_SYSTEM_ZLIB=1"
];
NIX_CFLAGS_COMPILE = [ "-fPIC" ];
LD_LIBRARY_PATH = makeLibraryPath [
arpack fftw fftwSinglePrec gmp libgit2 mpfr openblas openlibm
openspecfun pcre2 suitesparse llvm
];
dontStrip = true;
dontPatchELF = true;
enableParallelBuilding = true;
doCheck = !stdenv.isDarwin;
checkTarget = "testall";
# Julia's tests require read/write access to $HOME
preCheck = ''
export HOME="$NIX_BUILD_TOP"
'';
preBuild = ''
sed -e '/^install:/s@[^ ]*/doc/[^ ]*@@' -i Makefile
sed -e '/[$](DESTDIR)[$](docdir)/d' -i Makefile
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
'';
postInstall = ''
# Symlink shared libraries from LD_LIBRARY_PATH into lib/julia,
# as using a wrapper with LD_LIBRARY_PATH causes segmentation
# faults when program returns an error:
# $ julia -e 'throw(Error())'
find $(echo $LD_LIBRARY_PATH | sed 's|:| |g') -maxdepth 1 -name '*.${if stdenv.isDarwin then "dylib" else "so"}*' | while read lib; do
if [[ ! -e $out/lib/julia/$(basename $lib) ]]; then
ln -sv $lib $out/lib/julia/$(basename $lib)
fi
done
'';
meta = {
description = "High-level performance-oriented dynamical language for technical computing";
homepage = https://julialang.org/;
license = stdenv.lib.licenses.mit;
maintainers = with stdenv.lib.maintainers; [ raskin ];
platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ];
broken = stdenv.isi686;
};
}