nixpkgs/pkgs/applications/science/biology/samblaster/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

27 lines
668 B
Nix

{ lib, stdenv, fetchFromGitHub }:
stdenv.mkDerivation rec {
pname = "samblaster";
version = "0.1.26";
src = fetchFromGitHub {
owner = "GregoryFaust";
repo = "samblaster";
rev = "v.${version}";
sha256 = "0g24fq5hplnfgqkh3xqpg3lgx3wmxwnh9c7m6yw7pbi40lmgl1jv";
};
installPhase = ''
mkdir -p $out/bin
cp samblaster $out/bin
'';
meta = with lib; {
description = "Tool for marking duplicates and extracting discordant/split reads from SAM/BAM files";
maintainers = with maintainers; [ jbedo ];
license = licenses.mit;
homepage = "https://github.com/GregoryFaust/samblaster";
platforms = platforms.x86_64;
};
}