nixpkgs/pkgs/development/libraries/science/biology/elastix/default.nix

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{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, itk, python3, Cocoa }:
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stdenv.mkDerivation rec {
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pname = "elastix";
version = "5.0.1";
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src = fetchFromGitHub {
owner = "SuperElastix";
repo = pname;
rev = version;
sha256 = "1mx8kkak2d3ibfrxrh8jkmh2zkdlgl9h578wiw3617zcwaa97bxw";
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};
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patches = [
(fetchpatch {
name = "install-executables.patch"; # https://github.com/SuperElastix/elastix/issues/305
url = "https://github.com/SuperElastix/elastix/commit/8e26cdc0d66f6030c7be085fdc424d84d4fc7546.patch";
sha256 = "12y9wbpi9jlarnw6fk4iby97jxvx5g4daq9zqblbcmn51r134bj5";
})
];
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nativeBuildInputs = [ cmake python3 ];
buildInputs = [ itk ] ++ lib.optionals stdenv.isDarwin [ Cocoa ];
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doCheck = !stdenv.isDarwin; # usual dynamic linker issues
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preCheck = "
export LD_LIBRARY_PATH=$(pwd)/bin
";
meta = with lib; {
homepage = "http://elastix.isi.uu.nl/";
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description = "Image registration toolkit based on ITK";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.x86_64; # libitkpng linker issues with ITK 5.1
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license = licenses.asl20;
};
}