Commit graph

2445 commits

Author SHA1 Message Date
Brenton Horne 6be5e679b1 marvin: init at 19.1.0
Also adding myself (fusion809) as a maintainer.
The marvin Nix file in this commit is largely thanks to @msteen.
2019-01-15 00:23:38 +10:00
Johannes Frankenau bebf305c1b gurobi: 8.0.1 -> 8.1 (#53884) 2019-01-13 23:22:55 +01:00
R. RyanTM 26b492b207 minimap2: 2.10 -> 2.14 (#52845)
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2019-01-13 22:34:45 +01:00
Vladimír Čunát bde8efe792
Merge branch 'master' into staging-next
A couple thousand rebuilds have accumulated on master.
2019-01-12 12:19:34 +01:00
Dmitry Kalinkin 73625f2522 root5: mark as broken on Linux 2019-01-11 20:45:37 -05:00
Dmitry Kalinkin 0c9335fb1c root, root5: fix build on darwin 2019-01-11 20:45:37 -05:00
tbenst d34f2b9b96 bftools: init at 5.9.2 (#53769) 2019-01-10 18:28:28 -05:00
markuskowa b70a4b2b98
Merge pull request #53478 from bgamari/bump-ngspice
ngspice: 29 -> 30
2019-01-10 20:17:54 +01:00
Vladimír Čunát 287144e342
Merge branch 'master' into staging-next 2019-01-10 13:07:21 +01:00
Austin Seipp c10650760d yices: s/fetchurl/fetchFromGitHub/
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-01-08 19:15:24 -06:00
Austin Seipp 38aa0a3df4 z3: 4.8.3 -> 4.8.4
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-01-08 19:15:24 -06:00
Austin Seipp d77f381055 symbiyosys: 2018.09.12 -> 2018.12.09
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-01-08 19:15:24 -06:00
Simon Lackerbauer f7367cbf1c abella: 2.0.5 -> 2.0.6 2019-01-08 17:05:30 +00:00
R. RyanTM bd7eec5d9c pynac: 0.7.22 -> 0.7.23 (#53559)
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2019-01-07 14:52:18 +01:00
Vladimír Čunát 10a12194e3
Merge #53490: fix treewide linking errors after #51770
Issue #53001.  This might not be all of them, but let's not wait.
2019-01-06 12:14:52 +01:00
Frederik Rietdijk a4250d1478 Merge staging-next into staging 2019-01-06 09:48:31 +01:00
Frederik Rietdijk e5381cdece Merge master into staging-next 2019-01-06 09:36:23 +01:00
Jörg Thalheim 37fe593d48
cryptominisat: switch to python3 2019-01-05 16:38:10 +01:00
Jörg Thalheim 4a4d1d6497
cryptominisat: 5.0.1 -> 5.6.6 2019-01-05 12:45:44 +01:00
Frederik Rietdijk 60a3973a55 Merge staging-next into staging 2019-01-05 10:15:00 +01:00
Piotr Bogdan 71f216b7e6 golly-beta: link with lib{dl,GL} explicitly 2019-01-04 21:44:19 +00:00
Piotr Bogdan ae7557c4cb avogadro: fix libX11 underlinking 2019-01-04 21:13:57 +00:00
Frederik Rietdijk 9618abe87c Merge master into staging-next 2019-01-04 21:13:19 +01:00
Lengyel Balazs f4a53ff3bc treewide/xorg: replace *proto with xorgproto 2019-01-04 14:38:57 +01:00
Frederik Rietdijk 0a2caa41fe Python: drop python.majorVersion
Drop `python.majorVersion`. For Python language version, use `python.pythonVersion`.
For implementation version, use `python.sourceVersion`.

Some expressions were broken. Those that were identified were fixed.

fixup major
2019-01-04 10:45:22 +01:00
R. RyanTM c7afdaf5cd gtkwave: 3.3.97 -> 3.3.98
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2019-01-03 16:44:01 -05:00
Ben Gamari 537b0ac9be ngspice: 29 -> 30
Just a simple bump.
2019-01-03 16:16:51 -05:00
Frederik Rietdijk 2da31b80bb Merge master into staging-next 2019-01-03 20:07:35 +01:00
markuskowa d38f103586
Merge pull request #53312 from r-ryantm/auto-update/gromacs
gromacs: 2018.4 -> 2019
2019-01-03 18:52:49 +01:00
R. RyanTM 344fd2319b gromacs: 2018.4 -> 2019
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2019-01-03 05:58:09 -08:00
R. RyanTM c00dbcb7c4 picard-tools: 2.18.20 -> 2.18.21
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2019-01-03 08:39:10 +01:00
Frederik Rietdijk 092e3b50a8 Merge master into staging-next 2019-01-02 21:08:27 +01:00
Vladimír Čunát 70bff06140
Merge branch 'master' into staging 2019-01-02 17:19:23 +01:00
R. RyanTM e6d8d29f30 kicad: 5.0.1 -> 5.0.2 (#52866)
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2019-01-01 20:02:29 +01:00
Frederik Rietdijk 070290bda7 Merge master into staging-next 2018-12-31 12:00:36 +01:00
Vincent Laporte ea92816c74 why3: 1.1.0 -> 1.1.1 (#52980) 2018-12-29 21:05:23 +01:00
Timo Kaufmann 7abdacc4f2
Merge pull request #51039 from timokau/sage-8.5
sage: 8.4 -> 8.5
2018-12-29 16:15:38 +01:00
Timo Kaufmann 8cd7b5aab3
gap: 4r8p10 -> 4.10.0 (#53037)
This new version also has a libgap replacement, so after the next sage
update gap-libgap-compatible and libgap won't be necessary anymore.
2018-12-29 16:05:56 +01:00
Timo Kaufmann 22c16ed300 Merge remote-tracking branch 'upstream/master' into sage-8.5 2018-12-29 12:16:02 +01:00
Timo Kaufmann 95909d4fb6 Revert "sage: preload openblasCompat"
This reverts commit 4900bbee17.

The issue that was supposed to fix is now fixed by lazy-loading rpy2 and
makign sure scipy is loaded before that.
That is not quite as nice, but preloading is now causing its own issues
with openblas 0.3.4:
https://github.com/xianyi/OpenBLAS/issues/1936
2018-12-28 23:06:05 +01:00
Timo Kaufmann 360eddd3a3 sage: remove outdated patch files 2018-12-28 23:06:05 +01:00
Timo Kaufmann 6f0f06ec89 sage: 8.5.rc1 -> 8.5 2018-12-28 23:06:05 +01:00
Andrey Komarov bc7aa5d202 iverilog: 2017.08.12 -> 2018.12.15 2018-12-28 07:53:36 -06:00
Frederik Rietdijk 10afccf145 Merge staging-next into staging 2018-12-27 18:11:34 +01:00
R. RyanTM 338cf1a7fc igv: 2.4.15 -> 2.4.16
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2018-12-26 10:44:01 +01:00
Jan Tojnar c45e9d0fac
Merge branch 'master' into staging 2018-12-25 17:03:57 +01:00
Alexey Shmalko a5306b311b
Merge pull request #52768 from r-ryantm/auto-update/stellarium
stellarium: 0.18.2 -> 0.18.3
2018-12-24 16:38:24 +02:00
Jan Tojnar ef935fa101
Merge branch 'master' into staging 2018-12-24 15:02:29 +01:00
R. RyanTM c6cc68a510 stellarium: 0.18.2 -> 0.18.3
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2018-12-24 04:42:47 -08:00
Jörg Thalheim 5bae6dea20
Merge pull request #52669 from r-ryantm/auto-update/verilator
verilator: 4.006 -> 4.008
2018-12-22 12:51:50 +01:00
R. RyanTM d4021ad9e4 verilator: 4.006 -> 4.008
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2018-12-22 03:33:41 -08:00
Dmitry Kalinkin 62aea9510c
Merge pull request #51796 from bachp/dsview-0.99
dsview: init at 0.99
2018-12-21 17:40:40 -05:00
Alex Branham a5fc513079 R: 3.5.1 -> 3.5.2
Closes https://github.com/NixOS/nixpkgs/pull/52571.
2018-12-21 13:59:36 +01:00
Pascal Bach 3facb3bf79 dsview: init at 0.99 2018-12-21 10:24:16 +01:00
Samuel Dionne-Riel 3c38cc8058
Merge pull request #51813 from samueldr/aarch64/disable-non-arm-builds-part-1
aarch64: ZHF for aarch64 (1/??)
2018-12-20 21:06:52 -05:00
Renaud 6f5ec9d889
Merge pull request #52134 from r-ryantm/auto-update/picard-tools
picard-tools: 2.18.17 -> 2.18.20
2018-12-19 17:53:47 +01:00
Frederik Rietdijk 9ab61ab8e2 Merge staging-next into staging 2018-12-19 09:00:36 +01:00
volth fed7914539
Merge branch 'staging' into make-perl-pathd 2018-12-18 17:13:27 +00:00
Renaud 921caad16d
Merge pull request #52284 from r-ryantm/auto-update/gtkwave
gtkwave: 3.3.95 -> 3.3.97
2018-12-17 16:23:56 +01:00
Gabriel Ebner 21597583f9
Merge pull request #52067 from r-ryantm/auto-update/qalculate-gtk
qalculate-gtk: 2.8.1 -> 2.8.2
2018-12-17 09:46:32 +01:00
markuskowa 96b0a38f07
Merge pull request #52015 from r-ryantm/auto-update/star
star: 2.6.1c -> 2.6.1d
2018-12-16 23:38:37 +01:00
Timo Kaufmann b09967d812 sage: 8.5.rc0 -> 8.5.rc1 2018-12-16 21:33:28 +01:00
Jörg Thalheim 33c227c23b
Merge pull request #52392 from r-ryantm/auto-update/calc
calc: 2.12.7.1 -> 2.12.7.2
2018-12-16 17:33:43 +00:00
R. RyanTM ae22d3dc85 cubicle: 1.1.1 -> 1.1.2
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2018-12-16 17:24:47 +01:00
R. RyanTM 67536060ac calc: 2.12.7.1 -> 2.12.7.2
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2018-12-16 07:44:09 -08:00
R. RyanTM b26ba90c34 jmol: 14.29.28 -> 14.29.29 (#52275)
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2018-12-16 09:22:07 +01:00
R. RyanTM 54ece098fd gtkwave: 3.3.95 -> 3.3.97
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2018-12-15 18:07:39 -08:00
Michael Raskin 2f0cbb34cf
Merge pull request #52171 from r-ryantm/auto-update/pari
pari: 2.11.0 -> 2.11.1
2018-12-15 12:08:50 +00:00
markuskowa feb0aba969
Merge pull request #52153 from r-ryantm/auto-update/octopus
octopus: 8.2 -> 8.3
2018-12-15 11:46:44 +01:00
R. RyanTM 943e6fa283 pari: 2.11.0 -> 2.11.1
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2018-12-14 22:17:15 -08:00
volth bb9557eb7c lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
R. RyanTM b8e09ad0b5 octopus: 8.2 -> 8.3
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2018-12-14 19:45:56 -08:00
R. RyanTM b261fb0474 picard-tools: 2.18.17 -> 2.18.20
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2018-12-14 16:27:07 -08:00
R. RyanTM a7e1717d4b qalculate-gtk: 2.8.1 -> 2.8.2
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2018-12-14 07:37:22 -08:00
luz.paz ab9532b1fe gmsh: 4.0.5 -> 4.0.7 2018-12-14 08:01:20 -05:00
R. RyanTM 87481c2ff1 star: 2.6.1c -> 2.6.1d
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2018-12-14 01:07:34 -08:00
Samuel Dionne-Riel 5e1dfd3025 avy: Disable build on aarch64-linux 2018-12-10 14:55:20 -05:00
Samuel Dionne-Riel 7aabdea1ca aspino: Disable build on aarch64-linux
This is due to glucose not building.
2018-12-10 14:55:20 -05:00
Samuel Dionne-Riel 516f436614 glucose: Disable build on aarch64-linux 2018-12-10 14:55:20 -05:00
Timo Kaufmann 90bc5ce04d sage: 8.5.beta5 -> 8.5.beta6 2018-12-10 19:36:24 +01:00
Timo Kaufmann f0ea741a9a
Merge pull request #51786 from symphorien/giac-1.5
giac: 1.4.9 -> 1.5.0
2018-12-10 13:40:03 +01:00
Maximilian Bosch de02111a51
Merge pull request #51534 from jbedo/bowtie2
bowtie2: fix missing dependencies
2018-12-10 00:58:51 +01:00
Symphorien Gibol 29242e472e giac: build with nauty support 2018-12-09 23:18:58 +01:00
Symphorien Gibol 2253b3e760 nauty: also install libs 2018-12-09 23:18:53 +01:00
Symphorien Gibol 8b4f885264 giac: add missing optional dependencies 2018-12-09 23:18:53 +01:00
Symphorien Gibol e7801461e0 giac: don't split in multiple outputs for when gui enabled
This breaks the Phys and Turtle menu, among other things.
2018-12-09 23:18:53 +01:00
Symphorien Gibol b5435d0551 giac: 1.4.9 -> 1.5.0 2018-12-09 23:18:46 +01:00
Frederik Rietdijk e0950ae9ad Merge master into staging-next 2018-12-08 12:40:13 +01:00
Sebastien Maret da314a44ea gildas: 20181101_a -> 20181201_a 2018-12-06 12:02:05 +01:00
Justin Bedo 8c5251e3c0
bowtie2: fix missing dependencies 2018-12-05 10:51:30 +11:00
Frederik Rietdijk a510aa2672 Merge master into staging-next 2018-12-03 12:18:43 +01:00
Timo Kaufmann 5f2b8de75c
Revert "pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446)" (#51414)
This reverts commit d9b650f4cc.

The update is causing segfaults. See
https://trac.sagemath.org/ticket/26442.
2018-12-03 00:44:33 +01:00
markuskowa 506d4c7e44
Merge pull request #51329 from c0bw3b/cleanup/gnu-https
Favor HTTPS URLs - the GNU edition
2018-12-02 16:52:33 +01:00
c0bw3b 0498ccd076 Treewide: use HTTPS on GNU domains
HTTP -> HTTPS for :
- http://gnu.org/
- http://www.gnu.org/
- http://elpa.gnu.org/
- http://lists.gnu.org/
- http://gcc.gnu.org/
- http://ftp.gnu.org/ (except in fetchurl mirrors)
- http://bugs.gnu.org/
2018-12-02 15:51:59 +01:00
c0bw3b 0f868d8116 Treewide: use HTTPS on SourceForge 2018-12-02 15:33:08 +01:00
Jan Tojnar a51a99c690
gobject-introspection: rename package
camelCase package name was a huge inconsistency in GNOME package set.
2018-12-02 12:42:29 +01:00
Brenton Horne 10f40f3ac6 scilab-bin: adding application launchers
Moving the desktop configuration files from
opt/scilab-$ver/share/applications to share/applications, making the
required changes, and moving the icons in opt/scilab-$ver/share/icons to
share/icons. Moving locales, appdata and mime out of there
opt/scilab-${ver} too. Also removing unneeded scilab-${ver} and
scilab-${majorVer} symlinks from bin/.
2018-12-02 17:53:40 +10:00
Brenton Horne 7041972128 scilab-bin: adding bin/scilab symlink (#51346)
Should fix #51343, merely adding a scilab symlink within the bin/ directory, so that it can be detected by SageMath.
2018-12-01 23:25:40 +01:00
Timo Kaufmann 88b69a0d40
Merge pull request #51337 from timokau/sagenb-matplotlib-fix
sage: misc fixes
2018-12-01 22:04:48 +01:00
Timo Kaufmann 0e570199de sage: fix jmol integration 2018-12-01 21:31:29 +01:00