nixpkgs/pkgs/applications/science/biology/eggnog-mapper/default.nix

41 lines
1.3 KiB
Nix

{ lib, fetchFromGitHub, fetchpatch, makeWrapper, python27Packages, wget, diamond, hmmer }:
python27Packages.buildPythonApplication rec {
pname = "eggnog-mapper";
version = "1.0.3";
src = fetchFromGitHub {
owner = "eggnogdb";
repo = "eggnog-mapper";
rev = version;
sha256 = "1aaaflppy84bhkh2hb5gnzm4xgrz0rz0cgfpadr9w8cva8p0sqdv";
};
patches = (fetchpatch {
url = "https://github.com/eggnogdb/eggnog-mapper/commit/6972f601ade85b65090efca747d2302acb58507f.patch";
sha256 = "0abnmn0bh11jihf5d3cggiild1ykawzv5f5fhb4cyyi8fvy4hcxf";
});
nativeBuildInputs = [ makeWrapper ];
propagatedBuildInputs = [ python27Packages.biopython wget diamond hmmer ];
# make emapper find diamond & hmmer
makeWrapperArgs = [
''--prefix PATH ':' "${diamond}/bin"''
''--prefix PATH ':' "${hmmer}/bin"''
];
# Tests rely on some of the databases being available, which is not bundled
# with this package as (1) in total, they represent >100GB of data, and (2)
# the user can download only those that interest them.
doCheck = false;
meta = with lib; {
description = "Fast genome-wide functional annotation through orthology assignment";
license = licenses.gpl2;
homepage = "https://github.com/eggnogdb/eggnog-mapper/wiki";
maintainers = with maintainers; [ luispedro ];
platforms = platforms.all;
};
}